Package: linf
Type: Package
Title: L-Infinity Normalization and Dominant Community State Types
Version: 0.3.1
Authors@R: 
    person("Pawel", "Gajer", , "pgajer@gmail.com", role = c("aut", "cre"))
Author: Pawel Gajer [aut, cre]
Maintainer: Pawel Gajer <pgajer@gmail.com>
Description: Implements L-infinity normalization for compositional
        matrices, assigns samples to dominant features, constructs
        truncated and hierarchically refined dominant community state
        types, constructs unordered dominance sets with support-based
        sample filtering, and computes representative landmark
        profiles. The methods are described by Gajer and Ravel (2025)
        <doi:10.48550/arXiv.2503.21543>. Bundled vaginal and gut
        microbiome data support reproducible demonstrations of the
        package interface; phenotype fields in the stratified gut
        subset are illustrative and are not suitable for
        population-level inference.
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.0)
Imports: Matrix, methods
Suggests: testthat (>= 3.2.0), htmltools, knitr, plotly, rmarkdown
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://pgajer.github.io/linf/, https://github.com/pgajer/linf,
        https://arxiv.org/abs/2503.21543
BugReports: https://github.com/pgajer/linf/issues
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.3
Repository: https://pgajer.r-universe.dev
Date/Publication: 2026-10-04 19:43:03 UTC
RemoteUrl: https://github.com/pgajer/linf
RemoteRef: HEAD
RemoteSha: 810a0a84786215117f22490b10b6efa0cce51b9a
NeedsCompilation: no
Packaged: 2026-10-04 21:46:03 UTC; root